Annotation-Free Discovery of Disease-Relevant Cells in Single-Cell Datasets
Science Advances, 2025
CellFuse Enables Multi-modal Integration of Single-cell and Spatial Proteomics data
Abhishek Koladiya, Zinaida Good, Sricharan Reddy Varra, Sean C Bendall, Kara L Davis
bioRxiv, 2025
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IKAROS levels are associated with antigen escape in CD19- and CD22-targeted therapies for B-cell malignancies
Pablo Domizi, Jolanda Sarno, Astraea Jager, Milton Merchant, Kaithlen Zen B. Pacheco, Sean A. Yamada-Hunter, Maria Caterina Rotiroti, Yuxuan Liu, Reema Baskar, Warren D. Reynolds, Brian J. Sworder, Bita Sahaf, Sean C. Bendall, Charles G. Mullighan, Ash A. Alizadeh, Allison B. Leahy, Regina M. Myers, Bonnie Yates, Hao-Wei Wang, Nirali N. Shah, Robbie G. Majzner, Crystal L. Mackall, Stephan A. Grupp, David M. Barrett, Elena Sotillo & Kara L. Davis
Nat Commun, 2025
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Uridine Metabolism as a Targetable Metabolic Achilles’ Heel for chemo-resistant B-ALL
Yuxuan Liu, Haowen Jiang, Jingjing Liu, Lucille Stuani, Milton Merchant, Astraea Jager, Abhishek Koladiya, Ti-Cheng Chang, Pablo Domizi, Jolanda Sarno, Tim Keyes, Dorra Jedoui, Ao Wang, Jodie Meng, Felix Hartmann, Sean C Bendall, Min Huang, Norman J Lacayo, Kathleen M Sakamoto, Charles G Mullighan, Mignon Loh, Jiyang Yu, Jun Yang, Jiangbin Ye, Kara L Davis
bioRxiv, 2025
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Genome editing–induced t(4;11) chromosomal translocations model B cell precursor acute lymphoblastic leukemias with KMT2A-AFF1 fusion
Feng Pan, Jolanda Sarno, Johan Jeong, Xin Yang, Astraea Jager, Tanja A. Gruber, Kara L. Davis, and Michael L. Cleary
The Journal of Clinical Investigation, 2024
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Dasatinib overcomes Glucocorticoid Resistance in B-cell Acute Lymphoblastic Leukemia
Jolanda Sarno, Pablo Domizi, Yuxuan Liu, Milton Merchant, Christina Bligaard Pedersen, Dorra Jedoui, Astraea Jager, Garry P. Nolan Giuseppe Gaipa, Sean C. Bendall , Felice-Alessio Bava, & Kara L. Davis
Nature Communications, 2023
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Advances in Clinical Mass Cytometry
Abhishek Koladiya, Kara L Davis
Clin Lab Med, 2023
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tidytof: a user-friendly framework for scalable and reproducible high-dimensional cytometry data analysis
Timothy J. Keyes, Abhishek Koladiya, Yu-Chen Lo, Garry P. Nolan and Kara L. Davis
Bioinformatics Advances, 2023
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Single-cell technologies uncover intra-tumor heterogeneity in childhood cancers
Yu‐Chen Lo, Yuxuan Liu, Marte Kammersgaard, Abhishek Koladiya, Timothy J. Keyes, Kara L. Davis
Seminars in Immunopathology, 2023
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CytofIn enables integrated analysis of public mass cytometry datasets using generalized anchors
Yu-Chen Lo, Timothy J. Keyes, Astraea Jager, Jolanda Sarno, Pablo Domizi, Ravindra Majeti, Kathleen M. Sakamoto, Norman Lacayo, Charles G. Mullighan, Jeffrey Waters, Bita Sahaf, Sean C. Bendall & Kara L. Davis
Nature Communications, 2022
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