Tools to facilitate intuitive and biologically interpretable analysis of single-cell data

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Software

TidyTOF

TidyTOF is a user-friendly framework for high-dimensional cytometry data analysis and allows analysis across multiple levels of data including at the single-cell, at the population and at the patient level. Written with Tidy data principles, TidyTOF is accessible and transparent for robust data analysis.

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Tidy OMICS

The tidyomics ecosystem aims to bring the tidy R paradigm to the analysis of multiple types of omic data.

CyTOFIn

CyTOFIn enables preprocessing and alignment of mass cytometry data to ease integration of datasets collected over time or center. CyTOFIn enables users to easily rename channels, perform batch normalization and save time on pre-processing steps that can be highly time consuming.

Github: https://github.com/bennyyclo/Cytofin

MMIL

Coming soon!